PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4792_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 454aa    MW: 49035.6 Da    PI: 8.0538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4792_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.56.9e-115479126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   ++++ C f++rtG C yG++C+F+H+
  Neem_4792_f_1 54 PGEPDCLFYLRTGLCGYGSNCRFNHP 79
                   5789*********************8 PP

2zf-CCCH36.86.5e-1298122327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C ++++tGtCkyG++Ck++H++
  Neem_4792_f_1  98 QPDCGYYLKTGTCKYGSTCKYHHPK 122
                    789********************96 PP

3zf-CCCH38.32.3e-12144167427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    + C++++rtG Ck+G  CkF+H++
  Neem_4792_f_1 144 KSCPYYMRTGSCKFGVACKFHHPQ 167
                    66********************97 PP

4zf-CCCH34.63.1e-11292314224
                    -S---SGGGGTS--TTTTT-SS- CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFa 24 
                    +++ Cr+f+ tGtCkyG+ CkF+
  Neem_4792_f_1 292 DQPDCRYFMNTGTCKYGADCKFH 314
                    6899******************7 PP

5zf-CCCH34.53.4e-11337362126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +++++C++++ +G+Ck+G++C+F H+
  Neem_4792_f_1 337 PGQAICSNYSMYGICKFGPTCRFDHP 362
                    5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2915381IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-55380IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-85579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55880IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-45978IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-595122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.62495123IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-998122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4101121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6139168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352140168IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5142167IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5145166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831290318IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044290316IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8292314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5296313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911336364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6336362IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6336363IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-8338362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MNSVPPMPDN RQVKSNAVSN QSADNIEEAI WRLKIHDSQE GGGVAQSSPY PDRPGEPDCL  60
FYLRTGLCGY GSNCRFNHPA YAAQGTQYRE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH  120
PKDRNGAGPV SFNLLGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPSS VGTGLPVTGS  180
ASFGSMGSSV LPSSGLPYAG SLPTWSLPRS PYLSGPRLQG SQSYMPVIVS PSQGLVPAPG  240
WNTYMGNIGP VSPSSIAGSN LIYSSRNPSD LSTGGQVHML ATSSPNLPER PDQPDCRYFM  300
NTGTCKYGAD CKFHPPKERI AQSAASNVGP LGLPSRPGQA ICSNYSMYGI CKFGPTCRFD  360
HPYAGYPFNY GLSLPPLSIL DSPLMTHQAV PTTHSSDRSP IMSSKIPNWV QNSDAESMKH  420
QNTTTKNSDN SSEVDHSPTQ SVQNSSDHSH NQSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447662.10.0hypothetical protein CICLE_v10015215mg
RefseqXP_006469597.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A067F8M60.0A0A067F8M6_CITSI; Uncharacterized protein
TrEMBLV4U4N80.0V4U4N8_9R
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-128C3H family protein